YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47085997, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASCLYYLLP AVGGYALTSL YFLRNPQILH KMKQTAFRCT HISHRGGSGE RIENTIEAFT  60
   61 HAVEVGTEML ELDCHLTKDG FVMVSHDENL LRQTGQDVSI SSLNLEDLPP YKETLEVTFK 120
  121 TGHFSTGSDR KLALLEDVFR KFPHTAVNIE VKENNIVLIE KISELVKQYN REGISVWASV 180
  181 DSTIMENCRK INSSMPYMFS QKRGLQLLLL YYTGLLPFVP LGESFLQFYF PPIFNKAYIP 240
  241 DTEILKSRLV IFLIERLTMR KALFKHLRER GIQIHLFVCN EEQDIDAAFA AGATGVMTDY 300
  301 PTLLSNYIRR RKQAT

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.63
Transmembrane Helix	6	23	0.57
Cytoplasmic	24	206	0.73
Transmembrane Helix	207	226	0.66
Non-Cytoplasmic	227	315	0.78