YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47085883, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRVARPTA SLVRSLSTSS QNNAKVAVLG ASGGIGQPLS LLLKNSPLVS ELSLFDIAHT  60
   61 PGVAADLSHI ETRAHVKGYI GADQLGDALK GCEVVVIPAG VPRKPGMTRD DLFNTNATIV 120
  121 ATLVDGCARH CPQAMICIIS NPVNSTIPIT SEVMKKHGVY NPNKIFGVTT LDIVRANTFV 180
  181 AELKGLDPAR VNVPVVGGHA GITIIPLISQ CTPKVEFPAD QLSALTGRIQ EAGTEVVKAK 240
  241 AGAGSATLSM AYAGARFTFS LLDAMNGKEG VVECSFVRSE ETECKYFSTP LLLGKNGIEK 300
  301 NLGLGKLSAF EEKLVADAMT ELKGSIKKGE DFVANMK

Type	Start	End	Confidence
Signal Peptide	1	20	0.63
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	337	0.98