YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47086571, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.73
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRAALVTAT SLALTGAVVA HAYFLKHQFY PTVVYLTKSS PSMAVLYIQA FVLVFLLGKL  60
   61 MRKVFFGQLR AAEMEHLIER SWYAVTETCL AFTVFRDDFS PRFVALFTLL LFLKCFHWLA 120
  121 EDRVDFMERS PNISWVFHFR VLSLMVLLGV MDFLFVNHAC HSIITRGASV QLVFGFEYAI 180
  181 LMTMVLTTFI KYTLHTIDLQ SENPWDNKAV YMLYTELFTG FIKVLLYMAF MTIMIKVHTF 240
  241 PLFAIRPMYL AMRQFKKAVT DAIMSRRAIR NMNTLYPDAT PEDLQATDNV CIICREEMVT 300
  301 GAKKLPCNHI FHSSCLRSWF QRQQTCPTCR MDVLRASQPN QTPAPPAAQA PAPPAPANAP 360
  361 IPPPVNVAPG MMPQFPPGLF PFWGPFPGAP PPAVPGAPAA PTDTPQPSSE GAQGAESGAG 420
  421 GLAQSTADAA SAAPGAMPGF PFTMPPPFPS APWLPMPPPP PFMSSMPPPP SSLSSMSEAE 480
  481 LRELEQEGRR GLEARLQCLH NIHTLLDAAM LNIHHYLSTV ATLSPPRSET NTGETSESAN 540
  541 VESSPSTANT ETAGQEIQSQ SGESINGAAG FSQPDSTTEG ERDVKEEDED DGEPSAAELR 600
  601 RRRLRKLETT NTPDHGNLLK LASVN

Type	Start	End	Confidence
Signal Peptide	1	22	0.71
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	42	0.86
Transmembrane Helix	43	61	0.86
Cytoplasmic	62	100	0.81
Transmembrane Helix	101	120	0.82
Non-Cytoplasmic	121	135	0.74
Transmembrane Helix	136	156	0.92
Cytoplasmic	157	169	0.59
Transmembrane Helix	170	194	0.80
Non-Cytoplasmic	195	218	0.71
Transmembrane Helix	219	243	0.74
Cytoplasmic	244	625	0.64