YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182890200, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTGMQLLG LVLSIIGLVG GFLVCTLPMW RVTAFIGNNI VTAQITWEGL WMNCIWQSTG  60
   61 EIQCKGYDSL LALPSDMKAA RGLTVLAILI CSLSLTLGIL GIKCTECVGL PSLKARLARV 120
  121 SGVLFVIAGF LILVPVCWTA HSIIRDFYDP YVAAPHKREL GPALYLGWGA SALLLIGGSL 180
  181 LYAGSNPPGI PSSPTFSSDE SSPRRAGGSS QVKGYV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.77
Transmembrane Helix	8	30	0.91
Non-Cytoplasmic	31	79	0.78
Transmembrane Helix	80	102	0.90
Cytoplasmic	103	119	0.76
Transmembrane Helix	120	144	0.87
Non-Cytoplasmic	145	163	0.78
Transmembrane Helix	164	184	0.94
Cytoplasmic	185	216	0.82