YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NTCP7_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.90
Transmembrane Helix	11	28	0.94
Non-Cytoplasmic	29	39	0.72
Transmembrane Helix	40	58	0.92
Cytoplasmic	59	73	0.84
Transmembrane Helix	74	96	0.86
Non-Cytoplasmic	97	106	0.75
Transmembrane Helix	107	128	0.86
Cytoplasmic	129	135	0.83
Transmembrane Helix	136	158	0.91
Non-Cytoplasmic	159	167	0.73
Transmembrane Helix	168	187	0.92
Cytoplasmic	188	200	0.83
Transmembrane Helix	201	219	0.95
Non-Cytoplasmic	220	231	0.86
Transmembrane Helix	232	255	0.91
Cytoplasmic	256	264	0.82
Transmembrane Helix	265	287	0.77
Non-Cytoplasmic	288	303	0.74
Transmembrane Helix	304	322	0.88
Cytoplasmic	323	336	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLIARVRKE WFIIGIVLVI TFAKLQPSVG VKGGPLHPEI TITYVAVSVI FFNSGLSLKT  60
   61 EELASALMHV KLHFFVQTFT LVFFPIAIWL LLKVLALTAI NEWLLRGLQT VACMPPPVSS 120
  121 AVILTKAVGG NEAAAIFNSA FGSFLGIVVT PLLLLVFLGS SSSVPFTSIF SQLFMTVVVP 180
  181 LIVGQVCRRF LRECLDRRKP PFGAVSSVVL LMIIYSTFCD TFNNPNIELD HLSLLTVVFI 240
  241 IFSIQLSFMA LIFFLSTRKS SGFSAADSVA IMFCATHKSL TLGIPMLKIV FEGYEHLSLI 300
  301 SVPLLIYHPA QILLGSVLLP SIKTWMSGRQ KTLTPI