YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47086091, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGADSGPGAP SAVPWRKVLY ERQPFPDNYV DRRFLEELRR NIRVRQYRYW AVVRETGLIA  60
   61 QQVSCVALFL TLWSYMEQGE LEPSAVLCVC LGCALFGYGL YEVLGGASDG KRTRLADLQS 120
  121 AAVFLAFTFG FSPVLKTLTE SVSTDTVYAM SAVMLLAHLV SFPYAQPSPP GSLSLNAALF 180
  181 GSVCLASRLP GALHTFTMLT CALLVFALWP CLLHRVREKA DWSFPWAALL VCLAGVRGLG 240
  241 SLWPEGALLL SVALLMLTLL CPLLLVHLQR HKDNIHGPWD EAEIREDLSR FLN

Type	Start	End	Confidence
Cytoplasmic	1	51	0.89
Transmembrane Helix	52	73	0.81
Non-Cytoplasmic	74	82	0.66
Transmembrane Helix	83	104	0.89
Cytoplasmic	105	114	0.74
Transmembrane Helix	115	135	0.79
Non-Cytoplasmic	136	145	0.51
Transmembrane Helix	146	165	0.80
Cytoplasmic	166	171	0.48
Transmembrane Helix	172	189	0.58
Non-Cytoplasmic	190	192	0.60
Transmembrane Helix	193	213	0.91
Cytoplasmic	214	221	0.88
Transmembrane Helix	222	241	0.93
Non-Cytoplasmic	242	246	0.84
Transmembrane Helix	247	268	0.93
Cytoplasmic	269	293	0.97