YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49904114, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	215	0.99
Transmembrane Helix	216	237	0.93
Non-Cytoplasmic	238	259	0.91
Transmembrane Helix	260	281	0.89
Cytoplasmic	282	298	0.89
Transmembrane Helix	299	317	0.95
Non-Cytoplasmic	318	328	0.74
Transmembrane Helix	329	349	0.94
Cytoplasmic	350	389	0.98
Transmembrane Helix	390	410	0.84
Non-Cytoplasmic	411	420	0.76
Transmembrane Helix	421	440	0.88
Cytoplasmic	441	454	0.83
Transmembrane Helix	455	479	0.82
Non-Cytoplasmic	480	485	0.94
Transmembrane Helix	486	505	0.96
Cytoplasmic	506	525	0.93
Transmembrane Helix	526	547	0.79
Non-Cytoplasmic	548	558	0.73
Transmembrane Helix	559	583	0.74
Cytoplasmic	584	619	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPARFQIGD TVMGRWPGSN LYYEVKVMSF DNKTRLYTVI YKDGTELELK ESDITSVVIF  60
   61 QTAGRSRSRS RSPGRSPGRS SARSPGRPRR SRSRSPARTP RRASSRSTEV RKEKLKEVLE 120
  121 VRLTPVAMKH ENNSSNSKSE KKGENNTAKA APVVTEEKTE TESENQTGGR YNLRRRKDQG 180
  181 DGKAVELKKA VESEPLLQTK APAAVKTADL EFGGRVGVLF LMFLLPVAVL VLLILCGQKD 240
  241 ASLQSFPLEL PALQSVWDCQ VFGIVLLWLL FQAVLSLLPV GKLVEGMPLK NGKTLKYRIN 300
  301 GFYALLLTAV AAGVAVYQEV DLSYIHAHFL QFYTSALLIA TLLSIYLFIR SRWASKDELA 360
  361 PGGNSGYIIY DFFMGRELNP RIKSFDIKFF CEMRPGLMGW VLINFAMLLA EMKQQNLENP 420
  421 SPAMLLVNIF QLLWVIDGLW HEEKLLTMMD IMYDGFGFML TFGDLAFVPF TFTCQAYYLV 480
  481 NHPNELSVFW IITLIAMNGV GYYIFRKANS QKFAFRKNPS DPAVSHLKTI PTATGKSLIV 540
  541 SGLWGFVRHP NYLGDIIMAL AWSLPCGFNN LVPYFYLIYL VTLLVHRNAR DERQCRKKYG 600
  601 SAWEEYCKAV PYRIFPRVY