YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSMG1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFFGEVLS VYSRAVEEDE YEDMTNENEE DEQIRREIEE KRSVEVCWLL GSQDGPLQCS  60
   61 DLIIGAGPNA SGFIRAYLLS TVGWTAVAWL SFWNERSRGS ERPTVVPGPG EPSCVLYRLE 120
  121 SCPTVLICQC QGFVAEDQLF QFTEKVFSCV QTRDLNVTIL SDCSSADYKT SDYLSGSSTP 180
  181 FLRCLKTSTY THTVTCPPLE QPNICSGLAA AVLSHCQVHQ ISAVLYQCYS DVLHPDSASM 240
  241 QMFAATLSSV LKLEQSLSAD VLQRVTRVSE IQSNLYT

Type	Start	End	Confidence
Cytoplasmic	1	72	0.60
Transmembrane Helix	73	93	0.77
Non-Cytoplasmic	94	277	0.78