YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50540420, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.50
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPDYFFFHM HVQSVTMNKQ LSTCPAVLPT PLCLFVFSPF FCLFLSLCLS DCLCQAADLT  60
   61 IEKSSVLKPK PDPSTLVFGK QFSDHMLTIS WSAAGGWENP QIKPFQNLSL HPACSALHYS 120
  121 IELFEGMKAF RGVDNNIRLF RPMLNMERMH RSAERSCLPL FDKAELLKCI NKLVETDQEW 180
  181 VPYSTDASLY IRPTFIGTEP SLGVSRAGHA LLFVIVGPVG PYFATGSFNP VSLLADPRYV 240
  241 RAWRGGVGEY KMGGNYGPTI AVQNEAAKQG CQQVLWLYGE SEEITEVGTM NLFIYWTTKK 300
  301 GEKELVTPPL DGVILPGVTR QSLLDLAREW GEFKVTERRV FMKELLGALD EGRVLEVFGS 360
  361 GTACVVCPVG SLLYKGQTYQ IPTMKNGPDL AKRFHKELTD IQYGRLQRDW APLVV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.34
Transmembrane Helix	21	43	0.35
Non-Cytoplasmic	44	415	0.84