YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49904336, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	39	0.96
Non-Cytoplasmic	40	62	0.89
Transmembrane Helix	63	83	0.93
Cytoplasmic	84	94	0.86
Transmembrane Helix	95	117	0.92
Non-Cytoplasmic	118	211	0.85
Transmembrane Helix	212	233	0.86
Cytoplasmic	234	250	0.56
Transmembrane Helix	251	274	0.85
Non-Cytoplasmic	275	284	0.53
Transmembrane Helix	285	311	0.84
Cytoplasmic	312	316	0.49
Transmembrane Helix	317	342	0.71
Non-Cytoplasmic	343	359	0.46
Transmembrane Helix	360	385	0.47
Cytoplasmic	386	391	0.27
Transmembrane Helix	392	414	0.64
Non-Cytoplasmic	415	419	0.37
Transmembrane Helix	420	442	0.57
Cytoplasmic	443	526	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGKKERRSR DVKGLLKRNW ILIATIIAVI LGIGLGVVVR DYTSLTQLEK QYFGFPGEIL  60
   61 MRMLKMVILP LIVSSMITGV AALDSEVSGR IGLRAVVYYI STTIIAVILG IVLVMTIKPG 120
  121 VSQSADNIDR EGTTPNVTTV ETLLDLIRNM FPENLVQACF QQYKTQRREI EPTKPSINTT 180
  181 NATAFPPFTT IISTVAQNLT KDYKIVGSYS DGINVLGLIV FCVTFGLVIG KMGERGRILL 240
  241 EFFDALNEAT MRIVQIIMCY MPIGIFFLIA AKIIEVDDWE IFRKLGLYMV TVLSGLAIHS 300
  301 IIFLPLIYFV FVRKNPFTFT LGMAQALVTA LMISSSSATL PVTFRCAEEN NRIDKRITRF 360
  361 VLPVGATINM DGTALYEAVA SIFIAQLNNY DLNAGQIVTI SITATVASIG AAGVPNAGMV 420
  421 TMVIVLTAVG LPADDVTLII AVDWLLDRFR TMINVLGDAY GAGIVQKLSK RELERMDLTS 480
  481 DVDAANPFAL ETTLDDDECE DKKSYVNGGF TIDKSDAISF TETSQF