YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50540196, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEEFTDIN GNWISLDCQT HSSFCREFTV TSPKLSLRKV MVYTCCVWLF AYAVFFFTQN  60
   61 TAVLSSAIIL TLVGMVIHIH FVKVDHETLL IIGSLGVQLS SSYASGREST TFIEMSKLKD 120
  121 IVINEAVYMH NIIYYLCILI KDPADPETVT SVVPLFQSSK PRLNCLIQVY KSCQEILAQS 180
  181 R

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	56	0.85
Non-Cytoplasmic	57	61	0.76
Transmembrane Helix	62	82	0.91
Cytoplasmic	83	181	0.80