YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HRG1B_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPNRIYISV GYSTFGMLVG FSAFIVWNVV YKQPWTAAMG GLSGVLALWA LVTHIMYIQD  60
   61 YWRTWLKGLK FFMFVSSVFS LLAVAAFATF ITLSVIEKQS LSDPKSFYLS AVWSFMTLKW 120
  121 AFLLGLYSYR YRQEFADISI LSDF

Type	Start	End	Confidence
Cytoplasmic	1	7	0.86
Transmembrane Helix	8	29	0.91
Non-Cytoplasmic	30	35	0.76
Transmembrane Helix	36	58	0.91
Cytoplasmic	59	70	0.83
Transmembrane Helix	71	93	0.91
Non-Cytoplasmic	94	106	0.84
Transmembrane Helix	107	129	0.83
Cytoplasmic	130	144	0.87