YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21915536, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDQTRMLAS MGGLGGLSQA DVGDPDSVRK QQSLGQPQQD IGDILQQIMA ITDESLDEAQ  60
   61 ARKHALNCHR LKPALFSVLC EIKEKTVLSI RGVQEEDPPD PQIMRLDNML LAEGVSGPEK 120
  121 GGGSAAAAAA AAAAGGSPND GSIEHSDYRA KLAQIRQIYH SELEKYEQAC SEFTNHVMNL 180
  181 LREQSRTRPI SPKEIERMVA IIHRKFSSIQ MQLKQSTCEA VMILRSRFLD ARRKRRNFNK 240
  241 QATEVLNEYF YSHLSNPYPS EEAKEELAKK CGITVSQVSN WFGNKRIRYK KNIGKFQEEA 300
  301 NLYAVKTAVD AANVSAQASQ ANSPATPNSG GYPAPCYTPD GRL

Type	Start	End	Confidence
Signal Peptide	1	20	0.58
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	343	0.99