YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47550793, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.94
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	225	0.95
Transmembrane Helix	226	246	0.71
Cytoplasmic	247	466	0.81
Transmembrane Helix	467	487	0.83
Non-Cytoplasmic	488	492	0.64
Transmembrane Helix	493	513	0.86
Cytoplasmic	514	524	0.66
Transmembrane Helix	525	547	0.84
Non-Cytoplasmic	548	553	0.80
Transmembrane Helix	554	574	0.93
Cytoplasmic	575	589	0.90
Transmembrane Helix	590	609	0.93
Non-Cytoplasmic	610	616	0.77
Transmembrane Helix	617	635	0.90
Cytoplasmic	636	641	0.78
Transmembrane Helix	642	662	0.92
Non-Cytoplasmic	663	667	0.86
Transmembrane Helix	668	687	0.90
Cytoplasmic	688	698	0.75
Transmembrane Helix	699	720	0.92
Non-Cytoplasmic	721	735	0.88
Transmembrane Helix	736	757	0.89
Cytoplasmic	758	773	0.74
Transmembrane Helix	774	793	0.89
Non-Cytoplasmic	794	799	0.69
Transmembrane Helix	800	822	0.83
Cytoplasmic	823	828	0.59
Transmembrane Helix	829	849	0.72
Non-Cytoplasmic	850	853	0.70
Transmembrane Helix	854	874	0.91
Cytoplasmic	875	1079	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLRVVAS SCSSPLFSGL QCARTVKKPC VRFFRTHQAL NRLTSPGIPY KQLTVGVPKE  60
   61 IFQNERRVAI SPAGVEALIK QGFNVVVESG AGESAKFSDD MYTKAGATIR DVKDVFSSDV 120
  121 LLKVRAPMLN PTLGVHEASL MSEGATLVSF IYPAQNPELM DTLSQRKATV LAMDQVPRVT 180
  181 IAQGYDALSS MANIAGYKAV VLAANNFGRF FTGQITAAGK VPPAKVLIIG GGVAGLAAAG 240
  241 SARAMGAIVR GFDTRAAALE QFKSLGAEPL EVDIKESGEG QGGYAKEMSK EFIEAEMKLF 300
  301 AKQCLDVDII ITTALIPGRK APVLITKEMV ETMKDGSVVV DLAAEAGGNI ETTVPGELSV 360
  361 HKGVIHVGYT DIPSRLPTQA STLYSNNITK LIRAISPDKE TFYFDVKNEF DFGTMDHVIR 420
  421 GSVVMQDGKV LFPAPQPQNV PVAAPPKQKT VQELQKEKAS AVSPFRATLT TAGVYTGGLG 480
  481 TAIGLGLCAP NAAFTQMVTT FGLAGIVGYH TVWGVTPALH SPLMSVTNAI SGLTAVGGLS 540
  541 LMGGGYLPSS TAETLAVLAA FISSVNIAGG FLVTQRMLDM FKRPTDPPEY NYLYLLPTGV 600
  601 FVGGYGVALQ SGYNIEQMMY LGSGLCCVGA LGGLSTQSTA RLGNALGMIG VAGGIAATFG 660
  661 VLKPSPELMA QMSAAMAVGG TAGLTIAKKI QISDLPQLVA AFHSLVGLAA VLTCVAEYMV 720
  721 EYPHFATDPA ANLTKIVAYL GTYIGGVTFS GSLVAYGKLQ GLLNSAPLML PGRHALNATL 780
  781 MAASVGGMIP YMLDPSYTTG ITCLGSVSAL SAVMGLTLTA AIGGADMPVV ITVLNSYSGW 840
  841 ALCAEGFLLN NNLLTIVGAL IGSSGAILSY IMCVAMNRSL ANVILGGYGT SSTGTGKPME 900
  901 ITGTHTEVNV DQTVDLIKEA HNIIIVPGYG LCAAKAQYPI ADLVKSLTDQ GKKVRFGIHP 960
  961 VAGRMPGQLN VLLAEAGVPY DVVLEMDEIN EDFPETDLVL VIGANDTVNS AAQEDPNSII1020
 1021 AGMPVLEVWK SKQVVVMKRS LGVGYAAVDN PIFYKPNTSM LLGDAKKTCD ALSAKVREG