YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37497114, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLTEYPYN DTYYDNGTGA LNCTGCEAKH QYNYYAMLLT LLIFVIVFGN VLVCMAVSRE  60
   61 KALQTTTNYL IVSLAVADLL VATLVMPWVV YLEVVGEWRF SKIHCDIFVT LDVMMCTASI 120
  121 LNLCAISIDR YTAVAMPMLY NTRYSSKRRV TVMISVVWVL SFAISCPLLF GLNNTATRDG 180
  181 SVCEIANPAF VVYSSIMSFY VPFIITLLVY VQIYVVLRKR RKRVNTKRSC QKTDADAQPP 240
  241 LKEKCTHPED VKLCTVIIKT NGGVPAKNKK AQLIKEVLHQ GGDVGMEMVA GTSPPEKKKL 300
  301 ASSLVVDLLA TPPSPNHGSP SHAEYQSNGD EKNGHAKDVQ SPKETKPVET QALPNGKTRT 360
  361 TVTKTMSKRK MSQHKEKKAT QMLAIVLGVF IICWLPFFIT HILKTHCTSC VVPLEMYNAF 420
  421 TWLGYVNSAV NPIIYTTFNV EFRKAFIKIL HC

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.96
Transmembrane Helix	35	57	0.90
Cytoplasmic	58	68	0.81
Transmembrane Helix	69	90	0.94
Non-Cytoplasmic	91	107	0.88
Transmembrane Helix	108	129	0.88
Cytoplasmic	130	149	0.89
Transmembrane Helix	150	171	0.94
Non-Cytoplasmic	172	195	0.89
Transmembrane Helix	196	217	0.90
Cytoplasmic	218	378	0.99
Transmembrane Helix	379	400	0.92
Non-Cytoplasmic	401	418	0.89
Transmembrane Helix	419	439	0.80
Cytoplasmic	440	452	0.81