YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37497118, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVLNVTEEL TITASPSSAV FLSLHQSNCS VSPSPSSPPY NFYAVLLVLL IFCVVFGNVL  60
   61 VCVAVSREKA LQTTTNYLIV SLAVSDLLLA TLVMPWGVYL EVVGEWRFSR IHCDVLLTLD 120
  121 VMMCTASILN LCAISIDRYT AVAMPLLYNT RYSSRRRVAL MIAVVWFLSF AISCPLLFGL 180
  181 NNTASQEGRD CSFADPAFVV YSSVASFYVP FIVTLLVYVQ ICVVLRRRGR RTAPTRRRAA 240
  241 NTEPADAQRS CKNKCTHPED VKLCTLILKP PAAAPQRKKV TLVKEAVVHP LAVEPVCSLS 300
  301 ADREQTQTQP SGRAKLSLSV APCAGQSGPG PRRDTLQEKT HTEKHAAAKE RVRGRLSQQK 360
  361 ERKATQMLAI VLGVFIICWL PFFLTHVLKA HCGSCCISPS LYSAVTWLGY LNSAVNPVIY 420
  421 TTFNIEFRKA FIKILHC

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.87
Transmembrane Helix	42	65	0.92
Cytoplasmic	66	75	0.87
Transmembrane Helix	76	98	0.91
Non-Cytoplasmic	99	115	0.90
Transmembrane Helix	116	137	0.88
Cytoplasmic	138	157	0.88
Transmembrane Helix	158	179	0.94
Non-Cytoplasmic	180	203	0.89
Transmembrane Helix	204	224	0.91
Cytoplasmic	225	363	0.99
Transmembrane Helix	364	385	0.90
Non-Cytoplasmic	386	403	0.77
Transmembrane Helix	404	423	0.76
Cytoplasmic	424	437	0.82