YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SURF4_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQEDMMSAA EDLADQFLRV TKQYLPHMAR LCLISTFLED GIRMWFQWSE QRDYIEATWS  60
   61 CGYFLATCFV IINLIGQIGG CVLVLSRNLV QYACFGLFCI IALQTVAYSI LWDLKFLMRN 120
  121 LALGGGLLLL LAESRSEGKS MFAGVPSMGE SSPKQYMQLG GRVLLVLMFM TLLHFDSDFF 180
  181 SILQNMVGTA LIILVAVGFK TKLAALTLVV WLLAINVYFN AFWTVPAYKP MHDFLKYDFF 240
  241 QTTSVIGGLL LVVALGPGGV SMDEKKKEW

Type	Start	End	Confidence
Cytoplasmic	1	26	0.76
Transmembrane Helix	27	46	0.40
Non-Cytoplasmic	47	58	0.50
Transmembrane Helix	59	84	0.80
Cytoplasmic	85	88	0.49
Transmembrane Helix	89	111	0.88
Non-Cytoplasmic	112	115	0.51
Transmembrane Helix	116	134	0.62
Cytoplasmic	135	155	0.78
Transmembrane Helix	156	175	0.80
Non-Cytoplasmic	176	179	0.81
Transmembrane Helix	180	199	0.89
Cytoplasmic	200	206	0.71
Transmembrane Helix	207	227	0.88
Non-Cytoplasmic	228	238	0.91
Transmembrane Helix	239	261	0.89
Cytoplasmic	262	269	0.92