YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11119738, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.35
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRLVSLWFQ LELCAMAVLL TKGEIRCYCD APHCVATGYM CKSELNACFT KVLDPLNTNS  60
   61 PLTHGCVDSL LNSADVCSSK NVDISSGSSS PVECCHDDMC NYRGLHDLTH PRGDSTDRYH 120
  121 SSNQNLITRV QELASAKEVW FRAAVIAVPI AGGLILVLLI MLALRMLRSE NKRLQAQRQQ 180
  181 MLSRLHYSFH GHHHAKKGHV AKLDLECMVP VTGHENCCLG CDKLRQTDLC TGGGSGGERL 240
  241 LSLVHWGMYT GHGKLEFV

Type	Start	End	Confidence
Signal Peptide	1	17	0.35
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	138	0.62
Transmembrane Helix	139	164	0.86
Cytoplasmic	165	258	0.62