YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46452161, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWCEGSGGK MTWVKLLLSL VLLHAVSEAS ANQPPRFQNY FFQSYLLVYE DTPVGTSITQ  60
   61 LQAVDPDGEP LIFGVVGEEA MRYFAVQGTT GVVWLRQPLD REAKSEMQVE FTVSDSQGVV 120
  121 KDTVNIQIGD VNDNAPSFYN QPYAIQIPEN TPVGTSVFMV NATDPDQGVG GSVLFSFQPP 180
  181 SQFFSIDGAR GIVTVTRALD YETTIAYQLT VNATDQDKRR PLSSLANLAI TITDIQDMDP 240
  241 IFTNLPYSTN IMEDAPPGYE VRKIRAIDQD LGRPRGIGYT IISGNTNSMF ALDYISGSLT 300
  301 VSGQLDRENP LYSSGFIITV KATELNDDRT PSSATVTTTF TILLIDKNDN PPRFNSSEYR 360
  361 VLITELAQVG FALPLYIQVE DKDEGVNSMF QVFLTGNNSD HFSISPTSVQ GRADLRLRVA 420
  421 IPLDYETIRS YSFSLYANES LSEHVGFARV FIDLINENDN RPIFSQTLYN ISLPESIEPG 480
  481 ASLLQIKATD NDIGTFGVVR YYFSDEPDQF SLDAETGWVT LRGRLDYELM RRFTLTILAR 540
  541 DGGGEETTGR LRINVMDVND NAPVFQKEAY TGSLMENEQA PQQVIRARAT DEDSPPNNIL 600
  601 TYSIIYASQF RSFFSISIAE GYAVITVTRP LDYEQVPGGL IFLTLMAKDG GNPSLNSTVP 660
  661 VIIELIDQND NPPEFSLPSY IVNIPENIVA GATVLFVNAT DLDASREFGQ TSLIYSLQGS 720
  721 SQFRLNTRSG EITTTALLDR EMKSEYILIV RAVDGGVGPQ QKTGIATVNI TVLDINDNAP 780
  781 VWRDEPYQAN VVEMSPIDTD VITVFAVDPD YGDNGTVVYS INPENPFYTI NRNTGKIRTS 840
  841 GAVLDRESQD ARSAQLMRTI IISATDRGTP PLRSSASATV FVNLLDLNDN DPAFLNLPFV 900
  901 AEVPEGLPIG SSVFRVQVQD PDEAANGAVT MALQMGMPRL DFRLNITTGI LVSTVVLDRE 960
  961 QIGQYYLRII AYDAGQFPRT STSTLTITVL DVNDETPTFF PSVYNVSLEE SVPRDYLVVR1020
 1021 LNCTDNDAGL NAELSYFITA GNQDGKFSVG FRTGVVRTVV GLDRETQASY RLVIEAIDNG1080
 1081 PAGGRRTGTA TVYVEVLDVN DNRPIFLQNS YETSVLENIP RGTSILQVQA TDADQGENGK1140
 1141 VLYRILSGNN GQFSMDSLSG LISRGSVALD RETRSSNVLE VEAYNSDLGS MRSTVRVIVY1200
 1201 VEDVNDEFPV FTQSQYNRLG LRETAGIGTS VVVVRATDPD TGDGGAVAYS LVSGSDRKFE1260
 1261 VDVSTGLLTT VDYLDYETKT SYLMNVSATD QSPPFHRSYC TVYVTLLNEL DEAVAFLSAG1320
 1321 YEVSLRENIA TGTEVVQVKA QSADNLNQLS YRFDPDTSPA ALALFKIDSV TGRITVTGLL1380
 1381 DRERGDSYTL TVVADDGGPK RGSTVKVSIT ILDENDNSPE FDITSDLSVN IPEDTAIGKR1440
 1441 VAVVLARDKD AGRNGLVNFT LIAGNMQDVF KINTVNNTYG EVYLNAPLDR ESVDRYLLKV1500
 1501 RAMDNGSPPR YTDVSLTVNI VDVNDNPPVL QSPRGYNVSV SENVGGGTSV LRVVATDRDI1560
 1561 GANAMLSYYI TAGNQDLTFR MDRMTGEIVT RPSPPDREKQ QQYTLTVTVE DDGTPTLSTS1620
 1621 TTVWVRIIDE NDNAPEFPEE EYVTELREGP NTVGAIIATV TAIDPDEGLN GTIRYAISKG1680
 1681 NLAQTFQINS VTGQIVVVSA LDYEISNGHY VLTVTATDQC PIPLLRLTSS TTVLVNVIDV1740
 1741 NDNPPIFPRP FEGPFEITEG QPGPRVWTVK ATDADSGSNG KVEYSITAGD LKNEFVISSV1800
 1801 EGELRVRKDI ELDRETIAYY NITITAKDLG TPSLNATVVV GILVLDINDN DPILLNLPAN1860
 1861 TSVSEGAAVQ TFIIQVRAQD SDSGRNALLT YSITAGNSDG AFYINETSGV VQVNRPLDRE1920
 1921 RVAEYSLTIT VKDNPDNPRI ARRDSELLTV TLLDVNDNRP IFSQSSYRGE ISENSPTGTT1980
 1981 VLILNGPVLA EDKDIGVNAV VSYGLLGTRV DIFSIDSRTG VVSVRGGAVL DREAFSVPRV2040
 2041 ELFLVSVDVG GLNSSVPLTI TILDVNDNPP VFNPSSFTVR LPENSPTGVV VTQLSATDAD2100
 2101 AGSNGWLQYR LDSGAQDRFI VDALSGAVLV GNATLDREER SSYRLVVIAT DRGTPSLSGT2160
 2161 ATLTVVLDDV NDSRPRFIQP VQTISVNEST PPGVVVATLA AEDPDLKPRL EYYIISVEAK2220
 2221 DDGNNAVDGL QQSFGIDFHT GAVFVRNPLN RELVATFEII VSVHDNASDV IEMSVSVPNA2280
 2281 KLTINVLDVN DNAPRFRPFG VANFSESILE GAVPGTTLLS VTAVDPDKGP NGQIIYQLLN2340
 2341 LPRGNYIRLE DPSTGKIVAN RTVDFEQVQW LNFTVRAQDH GSPPRFTELP VYLRIIDVND2400
 2401 NNPVFQQPLY QKSIFEDVAL GTIIVSVRAT DADSGLFSVI EYGLVDGEGK FGITPTTGDI2460
 2461 YILSALDRET KDRYTLTAYA RDNPGGSPNN RRENSVQVQL TVLDVNDFRP RFSERVFTTS2520
 2521 VFENEPVGTS VITMKATDLD EGENALLTYS LQGPGADAFS LDPDTGLIRS LRLLQSFERF2580
 2581 NLTVVATDQG RPPLWGTASL QITVIDVNDN RPIFVRPANG TIMHILEEQP PGLVVYEVFA2640
 2641 TDEDEGVNGE VRYSFLQTGA GNRDWENFHI DAVTGVITTA VKLDREKQAL YSLVVVAYDL2700
 2701 GQPVPYETMQ PLQVALSDID DNEPVFLKPP RGSLPYQSLS VPEHSSPGTV VGNVTGAVDA2760
 2761 DEGSNAIVYY FIAGGDTGGN FALSVSGVLR VKKDLDREEI PVYSIIVKAS SNRNWTPPKG2820
 2821 QRSQRAQVLD PSRDPTLQEV RIFLEDINDQ SPRFTKLEYT TGVAADAKVG SDLIRVQAID2880
 2881 NDIGNNSLVL YHILSIRYIK LHSNDSEEMG NVFIIGETDG IICTFDLFMA YAPGYFIVEV2940
 2941 LARDLAGHSD VALVSIYILR DDQRVKIVIN EIPERVRLFQ EEFINLLSNI TGAIVNTDDV3000
 3001 QFHVDKKGRV NFAQTDVLIH VVNKQTNRIL DVEKVIQMID ENKEQLRNLF RNYNILDVQP3060
 3061 AVTARAPDDL TTLQMAIIIL AVLLFLAAML FILMNWYYRT VHKRKLKAVV AGSTGNQGLM3120
 3121 DILDMPNTNK YTFEGANPVW LDPFCRNLEL AAQAEHEDDL PEDLSDIADL WNSPARTHGT3180
 3181 FGREPQATKP EDDRYLRAAI QEYDNIAKLG QIMREGPIKG SLLNVVLDDY LRLKKLFAAR3240
 3241 LVTKSTSQGD RSSVTELIQS DLDEDDEERI GGRGTLRFKH KLPIELRGPD GVHAVHGSTG3300
 3301 TLLTSDLNSL PEDDQRALAR SLEALHADGG LYAERNARTE SAKSTPLHRN KGSDTLSESP3360
 3361 LEITEL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle