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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47085731, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.73
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFWISHQRI AFIFCFVLKV SAKESETCGG HLDASGAGYI TSPGYPLEYP PHQSCQWVIS  60
   61 APEPSQRIVL NFNPHFELER LDCRYDFIEI RDGNSESADL LGKHCSNIAP PAIISSGPFI 120
  121 HIKFVSDYAH QGAGFSLRYE IFKTGAEHCF RNFSSPTGVI ESPGFPDKYP HNLECSFIII 180
  181 APPQTEVTLT FQTFDLENDP LLMGEGECKY DWLDVWDGLP QVGPLIGRYC GSKIPPKIQS 240
  241 STGLLSLSFH TDMAVAKDGF SARYNMTHNE VSDTFHCSNA FGLESGKISD DQISASTSFY 300
  301 DGRWQPRQAR LNNEDNAWTP GEDSNKEYIQ VDLQFLKVLT GIATQGAISK ETQKSYYVTT 360
  361 FKLEVSTNGE DWMFYRHGKN HKIFHANTDP SEVVLNRIPQ PVLARFVRIR PQTWNNGIAL 420
  421 RFELYGCQIT DAPCSELQGM LSGLLPDSQI SASSMRDLHW SPGAARLVAS RSGWFPSPAQ 480
  481 PIAGEEWLQV DLGTPRTVRG VITQGARSGD GGTSSENRAF VRKYRLAHSL NGKDWNFVID 540
  541 SKTSMPKLFE GNTNYDTPEL RRFEELPAQF IRIYPERWSP AGIGMRMEVL GCNLPETSTP 600
  601 ALETSKPTQP TSVETSTTQK PSPVTSAALP SHKGLCDFEQ GWCGWTLDLD SDFSWVMHSS 660
  661 SKSSALGQSH NLSMGSNSLG NYLYIEASPE TQGQKARLFS PGVDPDTGPL CLMFSYQLED 720
  721 QGTLRVLLQN KQQEKTLLWS LSGDQQPIWR EGRTIIPRSP DELKVVIEGF FEGTKGHIWI 780
  781 DNIHMSGNTP LEECTQPFSA FPPDMIVKKP EVGNGRLFTG KDHINAGFQF PEWGTAETPS 840
  841 EPPVTHVIDK DNSWLYSLDP ILLTIIVMSS LGVLLGAVCA GLLLYCTCSY GGLTSRSSTT 900
  901 LENYNFELYD GIKHKVKLNQ QRCCSEA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle