YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45709089, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.83
Transmembrane Helix	29	48	0.92
Cytoplasmic	49	64	0.74
Transmembrane Helix	65	87	0.83
Non-Cytoplasmic	88	102	0.58
Transmembrane Helix	103	124	0.86
Cytoplasmic	125	140	0.90
Transmembrane Helix	141	160	0.89
Non-Cytoplasmic	161	174	0.65
Transmembrane Helix	175	195	0.89
Cytoplasmic	196	204	0.60
Transmembrane Helix	205	227	0.83
Non-Cytoplasmic	228	270	0.95
Transmembrane Helix	271	290	0.90
Cytoplasmic	291	308	0.83
Transmembrane Helix	309	327	0.92
Non-Cytoplasmic	328	379	0.93
Transmembrane Helix	380	402	0.90
Cytoplasmic	403	419	0.92
Transmembrane Helix	420	441	0.92
Non-Cytoplasmic	442	452	0.85
Transmembrane Helix	453	474	0.90
Cytoplasmic	475	481	0.87
Transmembrane Helix	482	503	0.90
Non-Cytoplasmic	504	521	0.92
Transmembrane Helix	522	545	0.88
Cytoplasmic	546	633	0.99
Transmembrane Helix	634	657	0.85
Non-Cytoplasmic	658	658	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGADYFGFSL LRNDVKRNTT IYVNNPADIS VIVIYFLVVL AVGVWAMVRT NRATVGGFFL  60
   61 AGRSMVWWPI GASLFASNIG SGHFVGIAGT GAAAGIAIGG FEWNALVVVI ILGWLFVPIY 120
  121 IKAGVVTMPE YLKKRFGGQR IRIYLSVLSL CLYVFTKISA DMFAGAIFIN QALGLNIYLA 180
  181 VVILLLITAL YTVTGGLAAV IYTDTLQTII MVVGSFILMG FAFNKVGGYE NFRDSYMTAI 240
  241 PSVIGTNISE SCYTPRADSF HIFRDPINGD LPWPGLLFGL TIQAGWYWCT DQVIVQRCLS 300
  301 AKNLSHVKAG CILCGYLKLL PMFLMVFPGM ISRVLYPDEI ACVDPDECKA VCGAEVGCTN 360
  361 IAYPKLVVDL MPNGLRGLML SVMLASLMSS LTSIFNSAST LFTMDIYTKI RPKAKEKELM 420
  421 IAGRLFMLLL IGISIAWIPI VQTAQSGQLF DYIQSITSYL APPIAAVFAL AIFCKRVNEP 480
  481 GAFYGLCVGL LVGLARMITE FAYGTGSCVN PSNCPTIICG VHYLYFALIL FGLSCILILS 540
  541 ISLMTKPIED KHLYRLCWSL RNNTEERIDL EADDWTEDQD SNSMETDEMR EEPGCCKKAY 600
  601 NWFCGFDQGN APKLTKEQEA ELKMKLTDTT EKPLWRNVVN ANAVILLTVC VFFHGFFG