YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APMAP_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEPEGLRFR RLNRPHIITD ETHEPQYKAT STYSGKVFRV TLLTMVAFLL LPLLVVVFVL  60
   61 ESPIQPEVFS LNEPPLMTGC YEPNLKLRQA ERLFEERLVG PESLANIGDV FYTGTADGKI 120
  121 VKIEGRNIHV LATIGKPPCG SREHEHTCGR PLGIRVGPNG TLFVADAYLG LFEVNPVTGE 180
  181 VKSLVSTEKR IAGRRLGFVN DLDVTQDGKK VYFTDSSSRW QRRDFMHLIM EATADGRVLE 240
  241 YDTETKEVNV MMENLRFPNG IQLFPDEESV LVAETTMARI KRVHVSGLNK GGMDTFIENL 300
  301 PGFPDNIRRS SSGGYWVAMS AVRPNPGFSM LDFLSQRPWL KKLIFKLFSQ DTLLKFVPRY 360
  361 SLVVELQSDG TCVRSFHDPQ GLVSAYSSEA HEYSGHLYLG SFRSPYLCKL DLSKV

Type	Start	End	Confidence
Cytoplasmic	1	37	0.98
Transmembrane Helix	38	60	0.91
Non-Cytoplasmic	61	415	0.99