YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46249709, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVSPGYARL KQNEPMNSLR ISVGGLPMLA SMTNTTDSRF RIKWKAIVVV ASALFLVLLI  60
   61 YMQLLPFHPQ PGSRYNLSLK HRKMSDEEGY NYTYPLSPPE RTAQGIRYRI GVIADLDTNS 120
  121 LSDKKLTWFS YMLKGHLLVS ESGDTVAVEW DQERVVLESH LAEKGRGMEL SELVVFNGKL 180
  181 YSVDDRTGVV YNIKGLNAVP WVILPDGDGS VSKGFKAEWL AVKDEHLYVG GLGKEWTTTS 240
  241 GEVLNNNPEW VKVVGFHGDV EHHNWVPTYN SLRSAAGISP PGYLIHESAA WSDTLQRWFF 300
  301 LPRRASSERY DETADERRGT NIMLSCSPDF QDIKVRNVGP LNPTHGFSSF KFVPNTDDQI 360
  361 IVALKSEEDA GKIATYIVAF TQDGRILLPE TKIGDVKYEG LEFI

Type	Start	End	Confidence
Cytoplasmic	1	45	0.83
Transmembrane Helix	46	65	0.94
Non-Cytoplasmic	66	404	0.99