YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40647585, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.66
Transmembrane Helix	7	25	0.70
Cytoplasmic	26	77	0.93
Transmembrane Helix	78	97	0.92
Non-Cytoplasmic	98	113	0.90
Transmembrane Helix	114	135	0.91
Cytoplasmic	136	143	0.84
Transmembrane Helix	144	162	0.89
Non-Cytoplasmic	163	213	0.89
Transmembrane Helix	214	234	0.93
Cytoplasmic	235	291	0.96
Transmembrane Helix	292	311	0.86
Non-Cytoplasmic	312	330	0.83
Transmembrane Helix	331	355	0.90
Cytoplasmic	356	451	0.99
Transmembrane Helix	452	470	0.93
Non-Cytoplasmic	471	485	0.79
Transmembrane Helix	486	505	0.69
Cytoplasmic	506	517	0.60
Transmembrane Helix	518	543	0.79
Non-Cytoplasmic	544	577	0.54
Transmembrane Helix	578	601	0.87
Cytoplasmic	602	617	0.48
Transmembrane Helix	618	632	0.37
Non-Cytoplasmic	633	654	0.72
Transmembrane Helix	655	677	0.86
Cytoplasmic	678	814	0.85
Transmembrane Helix	815	838	0.81
Non-Cytoplasmic	839	889	0.57
Transmembrane Helix	890	916	0.72
Cytoplasmic	917	936	0.64
Transmembrane Helix	937	962	0.66
Non-Cytoplasmic	963	1060	0.60
Transmembrane Helix	1061	1087	0.84
Cytoplasmic	1088	1130	0.73
Transmembrane Helix	1131	1155	0.75
Non-Cytoplasmic	1156	1172	0.62
Transmembrane Helix	1173	1192	0.79
Cytoplasmic	1193	1201	0.64
Transmembrane Helix	1202	1220	0.53
Non-Cytoplasmic	1221	1290	0.66
Transmembrane Helix	1291	1310	0.93
Cytoplasmic	1311	1382	0.70
Transmembrane Helix	1383	1406	0.84
Non-Cytoplasmic	1407	1847	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGGGGGGG GPGGGGVAGL ASFIMNEEEL KRKQREKLKK LLATGGNPRP PRTLFFFKLR  60
   61 NPFRKACTNI VEWKPFEIII LLTIFANCVA LAVFLPMPEE DTNNTNLTLE SLEYIFLVIF 120
  121 TLECFLKIIA YGLLFHEGAY LRNCWNILDF VIVFMGLFTL VVDTIDTITG VQKEKGGGFD 180
  181 MKALRAFRVL RPLRLVSGVP SLQVVMSSVL KSMLPLFHIL LLVFFMVTIY AIMGLELFKC 240
  241 KMHKTCYYQG TNIIALRENE KPSPCAQAGN GRRCTINGTE CRDGWPGPNF GITHFDNFGF 300
  301 AMLTVFQCIT TESWTDVLYW INDAMGNDWP WIYFLSLIML GSFFILNLVL GVLSGEFTKE 360
  361 REKSRSRGEW QVLRERQQMD EDLKGYMEWI THAEVMDGDS DAMLLLRKDT GSETDSLYKM 420
  421 EGINKVVYFY RLARRWNIVI RRKCHGWVKS KSFNWWVLIV VLLNTLVIAT EHHNQTEGLT 480
  481 NFQDTANVIL LACFTIEMIM KMYAFGPRSY FMSIFNRFDC FVVTIGILEI ILVGSGIMTP 540
  541 LGISVMRCIR LLRLFKLTKY WTSLNNLVVS LLNSVKSIAS LLLLLFLFIV IFALLGMQVF 600
  601 GGKFNFPDRP IQRSNFDNFP QALISVFQVL TGEEWDTIMY NGIMAHGGPK SPGILVSIYF 660
  661 IILYVCGNFV LLNVFLAIAV DNLAEAESLA AAQKERAEER ARKKLMKPLP EKTEEEKALM 720
  721 AKRLMESRQK TEGMPTTAKL KIDEFESNVN EVKDPFPPAD FPGDDEEEEP EIPISPRPRP 780
  781 MADLQLKETV VPMPEASSFF IFGPQNKFRK LCHRIINHTT FTNIILLFIL LSSISLAAED 840
  841 PIDPHSFRNK VLAYADIVFT TVFTIEIVLK MTVYGAFLHP GSFCRNSFNI LDLIVVAVSL 900
  901 LSMGMESSTI SVVKILRVLR VLRPLRAINR AKGLKHVVQC MFVAIKTIGN IVLVTMLLDF 960
  961 MFSCIGVQLF KGTLFYCTDP LQKTAEQCQG TFLKHVQNSL HDTEIHQRRW VNSDFNFDNV1020
 1021 LNGMLALFTI STFEGWPEIL YKAIDSYDVD TGPLYNNRVG ISIFFIIYII IIAFFMMNIF1080
 1081 VGFVIVTFQR QGEQEYKNCE LDKNQRQCVQ YALKARPLKC YIPENPHQYR VWYLVTSCYF1140
 1141 EYLMFFLIML NTLSLGMQYC NQPFYITKLS DNLNVIFTVL FTGEMIVKLI AFKAKGYFGD1200
 1201 PWNVFDFVIV IGSIVDVVLS EVDRTLEASG GLWCLHGCSE VDPMQAIAEA ENVKLSITFF1260
 1261 RLFRVLRLIK LLNRSEGIRN LLWTFIKSFQ ALPHVGLLIV MLFFIYAVIG MQMFGKIALV1320
 1321 DGTEINRNNN FQTFPQAVLL LFRVATGEQW PKIMLASMYG KLCDPKSDYG PGEEYTCGSS1380
 1381 IAVCYFLSFY MLCAFLVINL FVAIIMDNFD YLTHDWSILG PHHLDEFKKI WGEYDPEATG1440
 1441 RIKHLDVVTL LRRIQPPLGF GKFCPHHAAC KRLISMNMPL NSDGTVTFNA TLFALVRTAL1500
 1501 KIKTEGNFEQ ANEELRAIIK SIWKRTSMKL LDQVIPPIGE DEVTVGKFYA TFLIQEHFRK1560
 1561 FMQRQEELYG YRPTKKNADE IKAGLRSIEE EAAPELHRAI SGDLIAEDEM ERAMESGEEG1620
 1621 IYRRTGGLFG LNADPFSSEP SSPLSTQVTS QRPLQFAENR PEDAGSPPDS VFLPNTEFFP1680
 1681 DNMPTTSNTN NNANFIEEFT FESESLSASR NYSYEDIRDS SLYVGGASNV NDRRLSDFNV1740
 1741 KTNSTQFPYN PSCEESKNQR SAAEASPATD KLIQQALRDG GLESLAEDPQ FVSVTRKELA1800
 1801 EAVNIGLQDI ESVAQGIVNG QSGKVTKRKR RPIPVPPSKT KEATSAV