YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28279888, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKETKTKVL FFVILVGSVC MLTAVVTDHW AVLSPRVETI NTTCEAVHFG LWKLCKKHIY  60
   61 IEDKEYIGKP CGPISLPGEM NCSYFRHFTP GEDSEIFEVK TQREYNISGA AIALFSLAFV 120
  121 ILGTLCVLCS LKKGKDYMYK PAGMFFAFAG LCAFISVEVM RQSVLRMIAS EHTIWIEYYY 180
  181 SWSFACACTG FVLLLLSGIG LVLVSMPQMP RNPWESCMDA EPEQM

Type	Start	End	Confidence
Cytoplasmic	1	8	0.84
Transmembrane Helix	9	31	0.80
Non-Cytoplasmic	32	108	0.98
Transmembrane Helix	109	131	0.91
Cytoplasmic	132	140	0.82
Transmembrane Helix	141	160	0.91
Non-Cytoplasmic	161	180	0.88
Transmembrane Helix	181	204	0.93
Cytoplasmic	205	225	0.96