YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EMC3_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPELLLDS NIRLWVVLPI VFITFLVGVI RHYVSILLQS DKKLTLEQVS DSQVLIRSRV  60
   61 LRENGKYIPK QSFLMRKFYF NNQEDGFFKK TKRKVVPPSP MTDPSMLTDM MKGNVTNVLP 120
  121 MILIGGWINW TFSGFVTTKV PFPLTLRFKP MLQQGIELLS LDASWVSSAS WYFLNVFGLR 180
  181 SMYSLILGQD NGADQSRIMQ EQMSGAAMAM PADTNKAFKA EWEALELTDH QWALENVEED 240
  241 LMSKDLDLSG MFSKDLPTGI F

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.68
Transmembrane Helix	12	34	0.88
Cytoplasmic	35	114	0.69
Transmembrane Helix	115	136	0.76
Non-Cytoplasmic	137	157	0.70
Transmembrane Helix	158	179	0.54
Cytoplasmic	180	261	0.65