YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47086623, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.90
Transmembrane Helix	19	39	0.93
Non-Cytoplasmic	40	59	0.84
Transmembrane Helix	60	82	0.86
Cytoplasmic	83	89	0.65
Transmembrane Helix	90	108	0.88
Non-Cytoplasmic	109	110	0.64
Transmembrane Helix	111	135	0.81
Cytoplasmic	136	146	0.84
Transmembrane Helix	147	169	0.90
Non-Cytoplasmic	170	177	0.78
Transmembrane Helix	178	197	0.94
Cytoplasmic	198	232	0.92
Transmembrane Helix	233	254	0.93
Non-Cytoplasmic	255	268	0.83
Transmembrane Helix	269	287	0.91
Cytoplasmic	288	298	0.72
Transmembrane Helix	299	317	0.95
Non-Cytoplasmic	318	324	0.71
Transmembrane Helix	325	345	0.92
Cytoplasmic	346	356	0.76
Transmembrane Helix	357	379	0.87
Non-Cytoplasmic	380	390	0.83
Transmembrane Helix	391	415	0.89
Cytoplasmic	416	508	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGAVVDTGD SGVKAPDGGW GWAVLFGCFI ITGFSYAFPK AVSVFFKELI REFGVGYSDT  60
   61 AWISSILLAM LYGTGPLCSI LVNRFGCRPV MMVGGLFASL GMVLASFATN IIHIYLCTGV 120
  121 ITGLGLALNF QPSLIMLNRY FSEKRPLANG LAAAGSPVAL CCLSPLGQVL QYKYGWRGGF 180
  181 LILGGLLLNC CACGALMRPL LAPKKTSEVE EKPKETKPKP KLLDFTVFKD RGFLIYTIAA 240
  241 SIMVLGLFVP PVFVVSYAKE LGNEDTKSAL LLTILGFIDI FARPTSGIIA GLKWVRPRCV 300
  301 YLFSFAMIFN GIADILGSFA KDYASLVVFC IFFGISYGMV GALQFEVLMA IVGTEKFSSA 360
  361 IGLVLLVEAI AVLVGPPGAG RLLDATKNYM YVFMLAGCEV VLSALVLAIC NLLFIKRKPQ 420
  421 QPDPPAKMEM AITETEMEEL NKAPKDDQDN GGGAENEKKQ AIEPETKTTS KDEVKELESI 480
  481 EVDSIEVENA SKKVFGPNGV AVEPESSL