YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47086697, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	400	0.87
Transmembrane Helix	401	425	0.87
Cytoplasmic	426	443	0.81
Transmembrane Helix	444	463	0.92
Non-Cytoplasmic	464	512	0.72
Transmembrane Helix	513	529	0.54
Cytoplasmic	530	541	0.67
Transmembrane Helix	542	565	0.87
Non-Cytoplasmic	566	572	0.76
Transmembrane Helix	573	595	0.89
Cytoplasmic	596	606	0.64
Transmembrane Helix	607	624	0.81
Non-Cytoplasmic	625	635	0.86
Transmembrane Helix	636	660	0.90
Cytoplasmic	661	738	0.96
Transmembrane Helix	739	757	0.59
Non-Cytoplasmic	758	766	0.53
Transmembrane Helix	767	790	0.90
Cytoplasmic	791	834	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGELFRSEEM TLAQLFLQSE SAYCCVSELG EIGMVQFRDL NPDVNAFQRK FVNEVRRCEE  60
   61 MDRKLRFVEK EIKKANIPIV DTGENPEVPF PRDMIDLEAT FEKLENELKE INTNQEALKK 120
  121 NFLELTELKH ILRRTQQFFD EMEDPSLLEE SSTLLDPNEV GRAAPLRLGF VAGVIGRERI 180
  181 PTFERMLWRV CRGNVFLRQA DIEDPLEDPA TGDNVHKSVF IIFFQGDQLK NRVKKICEGF 240
  241 RASLYPCPET PQERKEMAAG VNTRIDDLQM VLNQTEDHRQ RVLQAAAKTV RVWFIKVRKM 300
  301 KAIYHTLNLC NIDVTQKCLI AEIWCPVSDL DSIQFALRRG TERSGSTVPS ILNRMQTKQT 360
  361 PPTYNKTNKF TSGFQSIVDA YGIGNYREMN PAPYTIITFP FLFAVMFGDL GHGVLMTCAA 420
  421 LYLVLRESRL IAQKNDSEMF SMVFAGRYII LLMGLFSMYT GIIYNDCFSK SLNIFGSGWS 480
  481 VRPMFGEKGD NWTFAVLEKS NVLQLNPAVP NVFTGPYPVG IDPIWNIATN KLTFLNSFKM 540
  541 KMSIILGVIH MIFGVSLSLF NHLYFRKPLN IYLGFIPEII FMVSLFGYLV LLIFYKWIAY 600
  601 DAKSSRVAPS LLITFINMCL FSYNDPTNKP FYTGQVVIQC LLVIIALSCV PCMLIVKTLV 660
  661 MRRQHLWRRH LGTQNFGGIH VGNGPTEDEA EIIQHDQLSQ NTEEEPEFNF ADEAVHQAIH 720
  721 TIEYCLGCIS NTASYLRLWA LSLAHAQLSE VLWSMVMHMG LSSRSFGGFI FLSIIFCFFA 780
  781 VLTVFILLVM EGLSAFLHAL RLHWVEFQNK FYTGQGFKFM PFTFDSILDG KSEE