YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37589752, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALMPVKFDL AKRVKLAQGL WLLYWLSVMA GILIFSTGIF LKIELRKRSE MMDNNESHFV  60
   61 PNLLILVGLV ACGVNTFGGK VCHDSLDTVK FTKWKTMLKA YMSGCVIFCI VLFVTALLCF 120
  121 LMQISLHFAL AEGLKNGMKY YKDTDTPGRC FMKRTLDMTQ IEFRCCGNNN YKDWFEIQWI 180
  181 SNRYLDFSND EIKDRVQSNV EGKFLMDSVP FSCCNPGSPR PCIQHHLTNN SAHYSYDHHT 240
  241 EDLNVWTRGC REALVSYYGG MMNSIGAFVL LFIIMQAVVT VGLQYLSTSL ETLTDPENPE 300
  301 SESEGWLLEK SLKETLSDLM TKIKSPFKGS QVEEGDAEAA PT

Type	Start	End	Confidence
Cytoplasmic	1	20	0.54
Transmembrane Helix	21	41	0.97
Non-Cytoplasmic	42	58	0.52
Transmembrane Helix	59	79	0.90
Cytoplasmic	80	99	0.49
Transmembrane Helix	100	124	0.88
Non-Cytoplasmic	125	263	0.54
Transmembrane Helix	264	286	0.76
Cytoplasmic	287	342	0.50