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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NSMA3_DANRE
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASALQQPS YLLANLKADW TNKPLHQRCH ELCKIIDDYP AKELHAIFPW LVECVFGSLD  60
   61 GILTGWNLRF LQARSAEYSI AMEFLDPSGP MMKLVYKLQA EEYKYEFPIS YLPGPIKSSI 120
  121 HAGVLPDCPL FHNKIQFPMS GLLFLNPFEY YMFNFASSLI APKNYPQGQH GSSSDSAYFV 180
  181 LVDTYLKYFL PTEGNVPPSP FSDTRGTVAS PAPRSTNVPY VGYGGHSTSL LKRHITHQSS 240
  241 VNADPAAQEI WRSETLLQVF VEMWLHHYSL EMYQKLQSPQ VKEPFMPSEE HVLVVRLLVK 300
  301 HLHTFSSSLK PESISSSPSA HSHSSPLEEL KRVVVQRFVQ QKLYVFLQHC FGHWPLDASF 360
  361 RAVLETWLSY IQPWRYTGDK NNTQTDGPNR TVPDKWASFV QENLLLYTKL FQGFLNRAMR 420
  421 TDLVNAKNAL MVFRVAKVFA QPSLSEMIQK GEQLFLEPEH AILQRHNRVF LTPSHGGSFL 480
  481 SARQPMGTDN VFKVKSHVYS LEGQDCQYNL MFGPDQRKNV LKLIQIIAQA RQTAKRISDH 540
  541 STEMAANNSF LSWFGVGSPD HNSTFTGGEM DEMGGEGVKK THEFLDKALD YLCQIFRLNA 600
  601 GQLSQLISNV ASVDNNGASK QLPDCIPSEN GLVLTDLGRL QIINGLRRFE IEYQGDPELQ 660
  661 PIRSYENAFL VRLLFQISSF INERLGEHME VLCSRQDFLG SVGRHYLSSS SAVVEQRRKS 720
  721 PVTRQMRDRP QRARLSLRAL ASYRTLLTLL LLYMLFALLS FGLFSSTGLI LIISFLYELL 780
  781 SNFFHEKLKT H

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle