YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSMO1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVNGTANIL SSAFLAVEFV DSFLPQNPLQ EPFKHAWNHM LQNYTKFQIA TWGSLIVHEL  60
   61 IYFLFCLPGF IFQFLPFMQK YKIQPDKPET WEKQWKCFKM LLFNHFCIQL PLICGTYYFT 120
  121 EFFSIPYDWD TMPRWPFLLA QCFGCAVIED TWHYFLHRAL HHRRIYKYIH KVHHDFTSPF 180
  181 GMQAEYAHPL ETLILGAGFF IGTMVFCNHM ILLWAWVTFR LLETIDVHSG YDIPLNPLHL 240
  241 IPFYAGARFH DFHHMNFVGN YGSTFTWWDR LFDTDSQFNK HYSHHKTAKS D

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.76
Transmembrane Helix	55	77	0.83
Cytoplasmic	78	100	0.85
Transmembrane Helix	101	120	0.92
Non-Cytoplasmic	121	136	0.86
Transmembrane Helix	137	156	0.82
Cytoplasmic	157	191	0.79
Transmembrane Helix	192	216	0.86
Non-Cytoplasmic	217	291	0.64