YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46249963, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQEPIYNT SLSNQTTNSS IDPNENLLAE EESTKALAVI YLVVFIVGLT GNSLAIFVVL  60
   61 RYTKMKTVTN MYILNLAVAD ELYILGLPFL TTHNVLSYWP FGNFLCRILM WADSISQFTS 120
  121 TFCLTVMSID RYMAVVHPIR SARWRRPSVA KVINSMVWAL SCLLTLPVII YCDVQPGLNT 180
  181 CNLSWPEPRD VWSTAFILYT AILGFFCPLL VICLCYLLIV IKVKSASARA GLSKRRKSEK 240
  241 KVTRMVVIIV VVFVICWLPF FMLNIFNLVV TLPENNIITG VYFLTVILTY VNSCANPLLY 300
  301 GFLSDNFKRS FQKVLCIHRV NGVSDEHPNR ARISRNHQEP FFPPRSFDYN DHVQSYQSIG 360
  361 LDGEHCAKPE NHHPGPQVIS QSI

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.89
Transmembrane Helix	37	60	0.92
Cytoplasmic	61	70	0.78
Transmembrane Helix	71	92	0.80
Non-Cytoplasmic	93	108	0.81
Transmembrane Helix	109	134	0.75
Cytoplasmic	135	149	0.93
Transmembrane Helix	150	171	0.89
Non-Cytoplasmic	172	195	0.91
Transmembrane Helix	196	221	0.91
Cytoplasmic	222	241	0.96
Transmembrane Helix	242	263	0.93
Non-Cytoplasmic	264	280	0.84
Transmembrane Helix	281	303	0.88
Cytoplasmic	304	383	0.97