YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHPT1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQCECPEPL SAVQLKRLEE HKYSAAGRSL FEPPCQIYWN WLVQQIPTWV APNTLTTIGL  60
   61 VINVITTVIL VYYSPTATEE VPGWAFFLSA LGLFIYQSLD AIDGKQARRT NSSSALGELF 120
  121 DHGCDAVSTV FVAVGTCICC GIGAYPNWMF FCGFVGMFMF FCAHWQTYVS GTLRFGLVDV 180
  181 TEVQIAIIIM YLLTAFTGVS FWEMRVPVLG VNLQTFPILG IIGGFLYSTY NYFFVIMNGG 240
  241 VGKNGSTVAD TSVLTPGLHI GLILTLAFII FKKSSSHLFE HHPCLYVLTF GMVIAKISNK 300
  301 LVVAHMTKSE LHLQDTAFIG PGLLFLNQYF NSYIDEHIVL WIAMVLSLVD LVRYCTAVCL 360
  361 QIASHLRIRV FSISPQGHAH KD

Type	Start	End	Confidence
Cytoplasmic	1	48	0.84
Transmembrane Helix	49	73	0.84
Non-Cytoplasmic	74	80	0.71
Transmembrane Helix	81	102	0.82
Cytoplasmic	103	133	0.60
Transmembrane Helix	134	168	0.73
Non-Cytoplasmic	169	179	0.53
Transmembrane Helix	180	202	0.83
Cytoplasmic	203	210	0.46
Transmembrane Helix	211	234	0.82
Non-Cytoplasmic	235	250	0.53
Transmembrane Helix	251	271	0.91
Cytoplasmic	272	281	0.50
Transmembrane Helix	282	303	0.66
Non-Cytoplasmic	304	337	0.52
Transmembrane Helix	338	360	0.75
Cytoplasmic	361	382	0.84