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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47086553, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLCVFSVL VLSLVIETQT LTPSHHLTTT DVARLQAVLS QPLTDLKSAY YSVVGLRKLG  60
   61 IFVADADETC RFIKSNLDPS SVESLFYAAE SSQALTGCEI LVSNDTRDLL LATVSEDSTV 120
  121 SQIHHSVSAL SSLGLPLASQ EVVSALKSRI SKEDNVLAII LALQTAARLS QQAELGDILE 180
  181 EIEDLAARLD DLGGVYLQFE DGLGATALFV TAAYALSDHV DVEPPLKEEQ VIQLVNSIFS 240
  241 KKSWDSLSEA FSVVSAAAAL SNNHFHVPVI AIAQGPAAVS HSQPFLQLQV TDVLCQPLSS 300
  301 ASVLVESASS VSSKSAILSQ APFTFRDGIF ELNFMANQPT SGYYQFSVAI AGDRRFVANH 360
  361 VELKVKVSTR VAINNMDLSV VDKDQSIGPK TTRVEYPTKA KSSFMADSHQ NFVMTFQLVD 420
  421 EITGVELTPH QTFVRLHNQK TGQEVVFVAE PDSKNLYKFE LDTAERKAEF DSISGTYALY 480
  481 LMVGDATLEN PVLWNVADVV LKFLDEEAPS TIQAKTLYIP KPEIKHLFRE PEKKPPTVVS 540
  541 NTFTALVLSP FLLLLILWFK LGANISNFTL SPSTILFHIG HATMLGLMYV YWTHLNMFQT 600
  601 LKYLAIIGSL TFLAGNRMLA QKAVKRLEGN 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle