YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47086447, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSGEVCVV TGACGFLGEK LVRLLLEEEN LSEIRLLDRN IRSELIQTLE DGRGETKVSV  60
   61 IEGDIRDREL LRRACKGATL VFHTASLIDY NGAVEYSELH AVNVKATRLL LETCIQQSVS 120
  121 SFIYTSSIEV ACPNRSGEPI INGHEDTPYS SYPISNYSKT KQEAEQICLQ ANGELLRDGG 180
  181 HLATCALRPM FIYGPGCRFT LNKLRDAIRS GNVQHRLSQQ SAKVNPVYVG NAALAHLQAG 240
  241 RALRDPEKRA VVGGNFYYVS DDTPHISYCD LTHALMSPLG FSIQNKPILP IFLLYLLAFF 300
  301 MEILQAVLRP VLRFTPPLNR QLVTMVNTPF SFSYQKACRE FGYSPRYDWE EARRSTTDWL 360
  361 ASVLPAERRL ANKT

Type	Start	End	Confidence
Non-Cytoplasmic	1	287	0.82
Transmembrane Helix	288	308	0.78
Cytoplasmic	309	374	0.66