YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31322057, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFPASKSDV KSVLDGVAET TFRTITSGLQ YIGSNDIGYD DHIIDGDFSK SGYPLPKPFA  60
   61 AYRRSSFADK VAPDEELIVK GLPFYPTNSS DVFGNWSHAE DGSLQCGENF MDMECFMILT 120
  121 PSQQLAIAVL SLTLGTFTVL ENLVVLCVIL QSRTLRCRPS YHFIGSLAIA DLLGSVIFVY 180
  181 SFLDFHVFHR KDSPNVFLFK LGGVTASFTA SVGSLFLTAI DRYVSIHRPL SYRRIVTRTK 240
  241 AVIAFCMMWA ISIIIAVLPL LGWNCKRLNS VCSDIFPLID ENYLMFWIGV TSVLVLFIIY 300
  301 AYMYILWKAH HHAVRMLRRT SQKSLVVHSA DGTKVQTPRP DQARMDIRLA KTLVLILVVL 360
  361 VICWGPLLAI MVYDLFWRMG DNIKTVFAFC SMLTLLNSTV NPIIYALRSK DLRRAFLAAC 420
  421 QGCRGTSTTP LQLDNSLESD CHRNQHRAAE SCVKTTVKIA KLTMSVSAET SAEAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	125	0.90
Transmembrane Helix	126	150	0.84
Cytoplasmic	151	160	0.91
Transmembrane Helix	161	183	0.90
Non-Cytoplasmic	184	197	0.91
Transmembrane Helix	198	220	0.90
Cytoplasmic	221	240	0.89
Transmembrane Helix	241	262	0.94
Non-Cytoplasmic	263	283	0.95
Transmembrane Helix	284	306	0.95
Cytoplasmic	307	351	0.96
Transmembrane Helix	352	373	0.92
Non-Cytoplasmic	374	384	0.82
Transmembrane Helix	385	407	0.92
Cytoplasmic	408	475	0.99