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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CRIM1_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSRMYLLV KCMLILQLMV LIAKNSRALI CLPCDKSKCE EPKPCTGSVV LGICGCCSVC  60
   61 AKQKNESCGG VYGLYGTCDR GLRCVIRPPL NGGSITQYEV GNCEDENWDD DQLLGFEPCN 120
  121 ENLVTGCNII DGKCECDSVR TCNNPFEFAS QEACQTALQK IEEERPDCSK ARCEVQFSPR 180
  181 CPEDSILIEG YAPPGECCPL PSRCVCSPAG CLRKVCQPGH LNILVSKSSG KPGECCDLYE 240
  241 CKPVFSVDCS TVECPPVKPV QCPADSYETQ VRLTADGCCT LPTRCECLPG LCTFPQCSAG 300
  301 MSPQVMSRGD GTPGRCCDVF ECVNETKPAC TLNGVEYHDG DMFRMDACRF CRCQGGVSVC 360
  361 FTAQCGVLHC ERYYVPDGEC CPVCEDPIYP VLSLAGCYVN GQILAHGDHW REDDCTFCQC 420
  421 VSGDARCVAA ACGHSCLNPV TVPGECCPVC EEPTYITMAP PACGSLDNCT LLEQSCAFGF 480
  481 RLDPSGCRTC ACKSREELCG GLMASCTLKC PFGFQTDIHG CDVCQCRPRH KKCKAVACAK 540
  541 DCPFGYIKNK HGCDTCRCKK CPELPCDKAC PMGFQHDELG CLICQCRDQS SSSVTPAVKL 600
  601 GSCLSMDGRR HENGQSWHDG CRDCYCHAGR EMCALISCPV PPCDNPTIRP GHCCPTCPEE 660
  661 SSSHKPELSE ASVCLAPGGE YFVEGETWNI DSCTQCTCHS GRVLCETEVC PPLLCHSPIR 720
  721 TQDSCCPHCP DDPVTPQTPS NDSMPSYCRN EDGDIFLAAE SWKPNVCSSC VCLDGAISCF 780
  781 SESCPPVNCA RPVLRKGQCC PYCLDATPRA VCHFNGKTYM DEERWDIDSC THCYCLQGQT 840
  841 LCSTVSCPAL PCHQPLTVEG SCCPMCPESY APTNVPIEKT DQRGDKSRHQ PAWPTHSEND 900
  901 VMPQFRGEFG SLQMPYLDGK TPLPSEDAGL HWAWVALPVL MMMLTLAALL LVNQRKQWIP 960
  961 VPCYRTPNKS TCLNNQLVYV DCQKGTKVQV DSSQRMLRIA DPDSRYSGYY SMQKHNNLQA1020
 1021 DNFYQTA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle