YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27447564, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEVCLFAAL VLYQFPLFLF KQELRAPVDR MSWGALYAQL GGVNKHSTSL GKIWLSVLFI  60
   61 FRICILVIAA ETVWGDEQSD FTCNTQQPGC KNVCYDHFFP VSHIRFWCLQ LIFVSTPALL 120
  121 VAMHVAYRKR NMKKKSILAK RGGNGKGDDL ESLKNRRLPI TGPLWWTYTS SLFFRLLFEA 180
  181 GFMYALYYVY DGFQMARLVK CEQWPCPNKV DCFISRPTEK TVFTIFMVGS SAICIVLNVA 240
  241 ELAYLIVKAL LRCSARAKGR CSFVHQEKMS TEKAHLQNEK NARLLSSASD SSSNKTV

Type	Start	End	Confidence
Cytoplasmic	1	52	0.94
Transmembrane Helix	53	72	0.93
Non-Cytoplasmic	73	105	0.94
Transmembrane Helix	106	127	0.94
Cytoplasmic	128	163	0.98
Transmembrane Helix	164	186	0.91
Non-Cytoplasmic	187	222	0.96
Transmembrane Helix	223	247	0.87
Cytoplasmic	248	297	0.97