YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM192_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMESGRTSA YGNNTNVDFT QSTDDDPLID GPLVSQDALE SAIKREFQTL STHWAVGVLS  60
   61 FLHVVYVVVC IVITVFCWIS DEHTSECTAA LNGIDSKTVV LLGKVALWVV VFIYDRVVQR 120
  121 RHSAVRRKGY LDFYRMTKGI KSLPLLIHSA GNAAILTVIA PSSLLDANVK NLSVYLLLAI 180
  181 ICLELLLTII CLLRYTVHVV KFNRKKPHPD VTEEERSYGC SSDAHTETGF RDGSSLEDVV 240
  241 EKQADLIDYL KQHNSVLSRR ILTLTGQQIR A

Type	Start	End	Confidence
Cytoplasmic	1	53	0.96
Transmembrane Helix	54	79	0.87
Non-Cytoplasmic	80	98	0.91
Transmembrane Helix	99	118	0.93
Cytoplasmic	119	143	0.91
Transmembrane Helix	144	165	0.88
Non-Cytoplasmic	166	173	0.88
Transmembrane Helix	174	197	0.92
Cytoplasmic	198	271	0.99