YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47086223, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPPLPAAAV RELVCSCLHR DPVAADLRCS LFVAAVQSYK HDSVLRPFPP RYLRGEIKDF  60
   61 EELQKDVDSL PNVRDLVRLG HGDGDHHMAL VHWVLSSKSF AVKTLQKEEF ARLSQLAQRE 120
  121 GVSAPAPDFL FELQYCDLLN SKFERTRAGR DLIYAFHGSR LENFHSIIHN GLHCHLNKTS 180
  181 LFGEGTYLTS DLSMAILYSP HGNGWRESVL GPFISCVALC EIIDHPDVKC QVKKKDSESI 240
  241 DRQRLRARNS EGGEVPEKYF VVTNNELLRV KYLLVYSQRR YRSRHARGTS WLVRHHFAIM 300
  301 MGLYLLLLIF IGAFNSSAFQ SFWHRMFR

Type	Start	End	Confidence
Cytoplasmic	1	291	0.70
Transmembrane Helix	292	314	0.87
Non-Cytoplasmic	315	328	0.62