YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47086177, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLSACKRSW RSCAKGHFHR LTVSRYNNNN NSNNTTVHFR WLNTLKTSCC SFSNRTCGSC  60
   61 SSVPEPRSPE LNKPSIGLHL RHAGAGFTAA LRLCGSSGFC TDASRKSELE DKYLKQDPRE 120
  121 NGEDPAASSP ANEGHFQFKE LYENPWTIPN YLCMARIVLS PVLGYLIMEQ YFHVSLGLFA 180
  181 LAGATDLLDG YIARNWPNQK SALGSALDPL ADKILISVLY VSLTYAQLIP APLTALIISR 240
  241 DVALIAAVFY VRYKTVPPPV TLSKFFNPCY TTARLKPTLI SKINTAVQLF LVAASLAAPV 300
  301 FHYTDSVLLQ SLWYITAVTT AASGYSYYHY GKKTVEVLNN TK

Type	Start	End	Confidence
Cytoplasmic	1	161	0.80
Transmembrane Helix	162	188	0.54
Non-Cytoplasmic	189	215	0.53
Transmembrane Helix	216	238	0.46
Cytoplasmic	239	282	0.78
Transmembrane Helix	283	303	0.85
Non-Cytoplasmic	304	310	0.78
Transmembrane Helix	311	330	0.75
Cytoplasmic	331	342	0.78