YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45709384, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSCLLIGR GSCQSNSSAA SGRRDPGGSS GRVTSDLRAR PLPPACLRRT YMEGVFKYVN  60
   61 TLLSCAIFVV GIVGNGTLLR IICQNRSMRN GPNALISSLA LGDLIYITID IPINVYKLLA 120
  121 MRWPFDDSVF GLFLCKLMPF LQKASVGITV LNLCALSVDR YRAVASWNRV QGVGIPVSTA 180
  181 LEIICIWLLA VVLAVPEAIG FKMVSFEYNN VTIRTCMLKP ETPFMTFYRD VKVWWLFGFY 240
  241 FCVPLLCTAV FYTLMTCEML SNRKGSLKFS LSEHLKQRRE VAKAVFSLVL IFALCWFPLL 300
  301 RQQEVQELLP VVSVLLVLLR RVSDGQWRST QRHQPTVQES RTQPAQGQLQ LTHTHTHTHL 360
  361 TCN

Type	Start	End	Confidence
Non-Cytoplasmic	1	57	0.64
Transmembrane Helix	58	82	0.82
Cytoplasmic	83	93	0.63
Transmembrane Helix	94	113	0.76
Non-Cytoplasmic	114	138	0.62
Transmembrane Helix	139	158	0.67
Cytoplasmic	159	171	0.87
Transmembrane Helix	172	195	0.85
Non-Cytoplasmic	196	233	0.93
Transmembrane Helix	234	256	0.91
Cytoplasmic	257	280	0.92
Transmembrane Helix	281	300	0.95
Non-Cytoplasmic	301	363	0.79