YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46250378, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAALELLG LILCVCGTLL EMVACGLPTW KVTAFIEANI VVAQTIWDGL WMSCAVQSTG  60
   61 QMQCKVHDSM LALSHDLQAA RALTVISSVL SVLALMVVIA GAQCTNCIKE DNVKARVVNV 120
  121 GGVIYILSAI FVLVPLCWMA NNIISDFYNP QVLPAQKREI GAALYIGWAA SALLLLGGSI 180
  181 LCCSCPASGS SGYSVKYAPT KRATSNGEYD KRNYV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.68
Transmembrane Helix	8	30	0.73
Non-Cytoplasmic	31	78	0.88
Transmembrane Helix	79	102	0.87
Cytoplasmic	103	116	0.81
Transmembrane Helix	117	140	0.87
Non-Cytoplasmic	141	163	0.85
Transmembrane Helix	164	187	0.82
Cytoplasmic	188	215	0.85