YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47085835, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALTMSEIE DCQRRFQAAV DVIQSLPKNG TYKPSYEVML RFYGLFKQAV CGPCTLSRPG  60
   61 FWDPVGRYKW EAWSNLGEMS RETAMAAYVD EMKKVAQDVI DTMQINEKNA SYFHYFEPLY 120
  121 HVIHDMPRPP EALFSLSSDV NVKEPTGGVF KHNVDSATQE PRLQQDTETS LNSELQPQST 180
  181 EQRMSECQGP ISDTESEVFC DSLEQMDNIK LTAVPDGNSP FQNGRTCIEI SGIQESHYSA 240
  241 PSQLVQIGVG HGEGAEDRHD PPMRMTTAGR EWLQQNWRDS PGFMAHHSAG RLSAAGSGLV 300
  301 DRDNSKSGSG QLQQQIFLAL RKLREDMQSV MERLDVVESL ATANAQNSHW ISHLQRTAGE 360
  361 SEEKWWPFEI SGRTLMLLLV WPFVTQWLSF LLRWKKRQIH GCI

Type	Start	End	Confidence
Non-Cytoplasmic	1	373	0.95
Transmembrane Helix	374	391	0.82
Cytoplasmic	392	403	0.75