YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47085801, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	38	0.85
Non-Cytoplasmic	39	46	0.78
Transmembrane Helix	47	68	0.89
Cytoplasmic	69	76	0.98
Transmembrane Helix	77	100	0.86
Non-Cytoplasmic	101	107	0.74
Transmembrane Helix	108	126	0.92
Cytoplasmic	127	134	0.80
Transmembrane Helix	135	152	0.96
Non-Cytoplasmic	153	158	0.75
Transmembrane Helix	159	178	0.92
Cytoplasmic	179	189	0.87
Transmembrane Helix	190	210	0.94
Non-Cytoplasmic	211	230	0.82
Transmembrane Helix	231	256	0.73
Cytoplasmic	257	283	0.55
Transmembrane Helix	284	302	0.67
Non-Cytoplasmic	303	375	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATEQRPPV REGMRIAVLC LCWYTVSSGG NVINKIILNS FPYPVTVSLF HIVSIIVFLP  60
   61 PLLRAWGVPR TELPARYYRW YILPLAFGKY FASVSAHFSI WKVPVSYAHT VKATMPIWVV 120
  121 LLSRIIMKEK QTTKVYVSLI PIIGGVLLAT VTELSFDMSG LISALAATLC FSLQNIFSKK 180
  181 VLRDTRIHHL HLLNILGFNA LLFMLPTWIL VDLSSFLMDG DLSEVSSWTG TLMLLLISGF 240
  241 CNFAQNMIAF SVLNLVSPLS YAVANATKRI MVISISLLML RNPVNTSNII GMMTAILGVF 300
  301 LYNKAKYDSN QEAKKGLLPV SAQDVVSFDK PQSNGTGAFT HSSDFQHGRS TVLTDHFQYS 360
  361 RQAYTANYSS SQYVV