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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27463074, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNHMTSLLV VLLLLCGCTA NQSQDNAPIP LFTQSVYNAT IYENSAAKTY VESPVKMGIY  60
   61 ITDPTWEIRY KIVSGDNENL FKAEDYHLGD FSFLRIRTKG GSSAILNREV RDHYILTVKA 120
  121 MEKNSNAEAR TRVRIQVLDT NDLRPLFSPT AYSISLPENT AIRTSVAKVM ATDADIGTNG 180
  181 EYYYSFREWT DMFSVHPTSG VVTLTGKLDY SETKQYELEI LAVDRGMKLY GSSGFSSMAK 240
  241 LTVRVDQANE HTPVITAVTL AASETDKDPT YAVVTVEDND QGANGEIASL SVVAGDPLQQ 300
  301 FRAMRTSPGS KEYQIKAVKQ VDWDSQPFGY NLTLQAKDKG TPPQFSSAKV IHVMSPHFKV 360
  361 GPPKFIQAIY RVNVSEFAPL HTPVVMVTAV PKYPQLKYAF RHRLDKNHFA INPDSGLITT 420
  421 AAPLHADSVN KYELEVVTSD KKAVTKVIID VIDVNNNGPE FKQTSYKASL DENMPTGTSV 480
  481 LTVKATDLDS GENGYVTYSI ANVNSQPFVI DYFSGVISSS ETLDYELMPR IYTLKVRASG 540
  541 WGSPYRREVE TQVTIMLNNL NDNKPLFENV DCDATVPRDH GVGDQITTVS AIDADELQLV 600
  601 RYRIKAGNDL NVFEMNPSSG VLSLKQTLSE GEAAKVSYHS LQIIASDGEH ETQPMFLNIT 660
  661 VVTAHKPVQV KCVDTGVASM PAEKLLQGSK VHTQSEPEDH FQDFHSVNRV APQFADTFPS 720
  721 VIEVKEDLPV GARIVHLSAS DSDSGFNGKL VYVISGGDAE SRFIIDMDSG WLKVFAPLDR 780
  781 ETTDHYTLNI TVYDLVPQKS SSRLLDVKIL DANDNGPQFL KETYSVEISE SSTVGTEVIQ 840
  841 VEAKDKDLGD NGVVRYSILA DTDQFAIDTE TGIVTVKKPL DREVQPVFVL KIAARDQATA 900
  901 EPQLVSTVLL KITLEDVNDN PPKFIPPNYH VRVREDLPIG TVIMWLEAHD PDVGPSSQVR 960
  961 YSLIDSGDGK FEVDKLSGAV RIVQNLDYEK KQVYSLTAKA KDKGKPISLS SSCHIEVEVV1020
 1021 DVNENLYRPL FPSFVDKGFI KEDVPIGTSV MKITAQDEDK GRDGEIRYSI RDGSGLGIFT1080
 1081 IDEDTGVIRT QELLDHETVP HYWLTVYATD RGVVPLSSFV EVYIEVQDVN DNAPQTSEPV1140
 1141 YYPSVMESSP KDVSIIQIEA FDPDTKSSEK LSYKITSGNP QGFFSINQKT GLVTTTSRKL1200
 1201 DREQQDEHIL EITVSDQGVP AKSTTVRVIV KVLDENDNSP QFMEKVYKIK LPVREKPEKE1260
 1261 RALKRDPVYR VIASDKDEGP NAEISYSIEE GDEQGKFFIE PKTGMVYSKK ASSAVDYDIL1320
 1321 TIKAVDNGRP QKSATCRLHI EWIPKPEPST VPLVFDEPFY TFSVMESDTV SHMLGVISLE1380
 1381 PVDTPVWFEI TGGNSDSRFE VGKASGTMIV AQALDAEQKS HYNLTVNATD GTRSVSTQVL1440
 1441 IKVIDTNNHR PQFSKPKYEV DVSEDTPPET EVLRISATDQ DEKNKLTYTL LSSTDPFSLR1500
 1501 KFRLDPGTGV LYTAERLDHE TMHQHTLTVM VRDQDIPVKR NLVRVIVNVQ DTNDNAPWFS1560
 1561 GAPYVGRVFE SAATGSAVLQ VSALDKDKGQ NAEIIYSIES GNVANSFAID PVLGTITVAK1620
 1621 ELDRNNKNRF ELTVKASDKG TPPLSGTAAV DITVTISDNA IPKFAEKEFS AEVSETVLPG1680
 1681 AFVSLVTANS QSSVFYQIKD GNVNGAFDIN PNSGVVVTHS VLDYETIPSY KLTIQGTNMA1740
 1741 GLASNTTLLI HLKDENDNAP VFIQDQFAGM VSESSPVNSV VLTKDNTPLV IRALDTDRDA1800
 1801 NSRLVYQIVE PFAHNYFAID SSTGAIRTIS ELDYEQRSVF RFSVQVHDMG IPRHFAEKAA1860
 1861 NVTIEILDVN DCPPQFSQDL YETTVLVPTY KGVEVITVNA SDADSGPNSR LFYSIVEGNI1920
 1921 GEKFKMDPVT GVITIQNVTQ LRSWYELRVR VSDGRFSKTS LVKINVRENK ESTLRFTQES1980
 1981 YKAFVPENFS EKKTLAVIAA VGNQVNEPLF YTILNPDKRF TISRTSGVLS STGTPFDREE2040
 2041 QGVFDIVVEV TRDDKSPDAA HVLVTVIVED VNDNPPVFVN LPYQALAQVD ADVDHIITKV2100
 2101 TAVDADINEN AEINYHLQEL NEFVQISTDG EISLTKKLDK DSVNTEFIIT VVARDGGEPA2160
 2161 LSSSVEVPIM VVNKAMPVFE KAFYSPEIPE NIQLLTPIVH IQANDSEGPR MFTDHRRGDP2220
 2221 LNQFTINFNT GVIQVVKTLD FETHPAYKLS VRATDSLTGA KAEVFVDIIL EDVNDNPPVF2280
 2281 HTKLYNASLS EASVIGTSVL EVSATDADTG NNKVLFYQIV EDKDKSFDYF SIDRDTGTIW2340
 2341 TTRMLDHEEK PSHRLLIRAV DGGVPALSSE VMVLIDVMDL NDNTPVFSQN VYEATVSELA2400
 2401 PRGHFVTQVQ ASDADISDSG KLEFSILSGN EGQNFAMDPN TGALVISNHR KPHMESLYNI2460
 2461 NVSVSDGVFR SSAIVKVNVI SANFHNPTFN QVDYVVELLE NSPVGTLVAE AQATDDDSGT2520
 2521 YGRLTYHIVN DIAKDKFSIS ENGEIFTLES LDRENALEKV IPISLIAKDG GGKVGFCTVN2580
 2581 VILTDINDNA PQFRAADYRV NVASDVPRGT TILKIAASDM DEGSNADITY SIETDADNVE2640
 2641 GNFEIHQFSG VIVTKESLIG LENQLYTFLV RAKDGGNPTK SSVVPVYVKI LAPEVPVPKF2700
 2701 IESHYRFAIE EDLSLGSEID VIQTESDQPV FYSLVKGNTP ESNQDEVFVV DPSSGSLKLD2760
 2761 KKLDHESTKW YQLTLQAQSE YEGSKVVSAV DISIQVKDVN DNRPLFESNP YEAFVVENLP2820
 2821 GGTCVIQVKA TDLDSGTNGH VVYNLDPNQE TRDIVELFAI NSESGWITTL KELDRETRNK2880
 2881 YTVSVLATDR GDKVQLMAST RVDVTVVDVN DNPPKFTAEI YKGTVSEDDP PGGVIAILST2940
 2941 TDLDTEENNK QISYFITGGD PLGQFAIEHT QGEWKVSVRK PLDREEKDNY LLNITATDGT3000
 3001 FTAKAVVEVK VLDASDNSPI CEKSFYMESV PEDSPAGRLI LQVSATDADI RSNAQISYEL3060
 3061 LGPGSEHFSI DSETGELKTL LPLDREEEEV HKMKVRALDG GGRFCEAEVE ITVEDVNDNP3120
 3121 PQFTTDPYTF TVFENTEINT PVARLYASDL DTGANAEIMY SLLDSADGVF SIEEETGVVR3180
 3181 LDRPLDRELQ SLYTLRAQAT DRGSPRHLSS QTLLSVSILD INDNPPVFER REYTATVAED3240
 3241 IPVGTQVLRV HAASRDTEAG TEITYAIING NERGAFRVDP QTGGVFVIEP LDYETAHEFY3300
 3301 LTVEATDGGT PSLSDLATVN INLTDVNDNS PVFNQDIYSA VISEDAELGK TVLTVMADDA3360
 3361 DGPSSNQVRF SIIDGNQGSP FTIDPVRGEV KVARLLDREK TSGYTLTVLA SDNGGPARSS3420
 3421 SATINVDVSD INDNPPIFSQ ANYSIIIQEN QPIGASVLQL TVSDRDASHN GPPFTFSIIR3480
 3481 GNEGDFFRIT PQGVLVSAAT LSRQTQEFYL LQAQVTDSGR PPLVSTAFVS VRLIEESIYP3540
 3541 PSILPLDIFI TTATDEYSGG VLGKIHATDQ DVYDTLTYSL APDSSSTSEN SGLFSVSPAD3600
 3601 GKLVARGNLD AGQYVLNITV TDGRFTAAAR VNIHVRQATA QALDNSIAVR FSAIAPEEFI3660
 3661 GDYWRNFLRA LRNIAGVRRG DVQLVSLQPA ADASGDLEVL LALERSGSPF QPQEVLYRKL3720
 3721 NASVGVIEEM TGVRIVRVVK KLCAGLDCPL SFCQETIALE TGAVSAYSTA RISFVTPRHM3780
 3781 RTAKCPCEGA ECSILSKLCE GSPCPDGMEC VEDPTHSKYR CICPEGKQEE CSERQSLTFS3840
 3841 GNGYARYRLM ENENKEEMKL SLRLRTFSTH ATVHVRQRHR LQHTEDRDGP LQYKFDCGSG3900
 3901 PGVVSVHSTQ VSDGQWHTVS LEVNGNYARL VLDQVHAASG TAPGTLRTLN LDTSMYFGGH3960
 3961 VRPASGSGRL VMSGLRGCLE GIVFNGRELP LSQVRGAHSV LEELVDVAPG CSLAPPIQGC4020
 4021 TSNPCTNGGT CSALPNGGYF CKCTAAFMGT HCEVTISPCA SNPCLYGGTC IPRGGDFYCQ4080
 4081 CRGQYSGQRC QLGPYCTDNP CKNSGKCIDS LDGPVCECEP GFQGERCLSD VDECLKNPCG4140
 4141 NGGHCQNTYG SFSCNCSNGY SGQHCELRSE IRNEFVSTSW NIGLEEVIGI VVFVASIFFL4200
 4201 VLLFVVVRKR ICRRSKSKSD DDDKIGISTG TQNSFLHRPY FDAKLNRNIY SDIPPQVPVR4260
 4261 PISYTPSIPS DSRNNLDRNS FEGSAIPEHP EFSTFNPDSV HGHRKTVAVC SVAPNLPPPP4320
 4321 PSNSASDSDS IQKPSWDYDY DAKVVDLDSC LSKKPVEDSA CHPYNTTGSM SEVHSLSSFQ4380
 4381 SESCDDNGYH WDTSDWMPSV QLPGIQEFPQ YEVVEAPPTL YSDPALLDTD YYPGGYDIES4440
 4441 DLPPPPDDFP SHDDLPPPPP VPEYGDRYDT LQPASRGLNS TPSSPGGSSI RHRPPLPQLY4500
 4501 SLTQFLPHHH YSSDPEPQTN PTSTITSSST EGYRHGGFSL GYRRDFDPPA ADNMSLSLYT4560
 4561 STASCSDMSA CCEESEVMMS DYESGGEEGA QFQRLIIPPL DSQHQQHTEV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle