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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HEG_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.76
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMETCARRVL FTAALLVLST VIAETFSTDS DTDNPLSTET FYSRASGLKQ TSSWPGREAT  60
   61 ATAVDLSSGL GEMTEIPASV SITAAREGHS PKPLQTSTNA ADWKTSTTSD ETTEHLQSDT 120
  121 ELTHNATAQW ESPSSASHSI TSHHPVTETR TVRDVTDLID MDTTDSVSHT DSTYISTTNR 180
  181 VGERTLLSVI SNSTFAYTQN SSISDAESQT SPWEEKTSGA TQVNEETEET VSTVSEQTDP 240
  241 TFEGRNTTSA TLETERSTLS QGTESQTGQP SVTGQTAKEV TDIDNPNSTP PLTVTSRDVE 300
  301 ETDATSVSSE TSYTQTSSDS ASSILPFTSS EHNVTSTSQE SHNSTLIYST NTGGSTEFST 360
  361 GSVSSTAHEE TERSSTRIVD ETTLHDVTSA PPVLEDVATT IDDSLSKFPS GQSPTIPKTD 420
  421 DQTNTQVVPT STHRPQVTDE ATDEVSTVYS STTTLTTTTP SVTTRQLQPH YTTVQTQTQH 480
  481 TTIVTTDIIQ VLRTTPSTAH HVPTLTTSGP QAPSTADSSD VTTLHLETST ATPGNTTAHG 540
  541 GRATTPFSKS SPGRTTVVVT TGHLTDKSTT ETGSATTQMP LRTSASPGHV CGPKTCANGG 600
  601 HCVRSAEGSY YCQCLSAWTG PFCTEDVDEC VNSPCPQGSV CVNTGGSFSC ECDLGFDLED 660
  661 GRSCTQVKTF LGTFTVNNSL HLRNLGLHEL HREIQQLLNA SLSIFHGYRR FTLGKRDGQG 720
  721 VQIPVVSMFS LSSNVTSADV FNSIQMSLNN CSRTYSHCPI KLQHQLSYHV ESLCMAQKTK 780
  781 CDVQYSDCSD ISGIPNCQCL PGYFKRNPED MTCRDCGDGL KLVNGKCVEC MFGFGGFNCN 840
  841 NFYKLIAVVV SPAGGALLLI VVIALIVTCC KKDKNDINKI IFKSGELQMS PYAEFPKSNR 900
  901 VSMEWGRETI EMQENGSTKN LLQMTDIYYS PALRNSDLER NGLYPFSGLP GSRHSCIYPA 960
  961 QWNPSFLSDD SRRRDYF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle