YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZNT6_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVALDVLGIT DSDAPVYRQK QEADTLVLGT IHPFRKAHRS VLGKLAQEFR LVTSDRRSWK  60
   61 ILLFGVLNVV CTGCLLMWCS STNSMALTAY TYLTIFDLFS LITCLLSLWV TMKKPSQIYS 120
  121 FGFQRFEVLA VFSSTVLVQL GSLFILKESV ERFVEQPEVH TGRLLVGTFV ALFFNLLTLL 180
  181 SVKNKPFVFV SEAASTSWLQ EHVADLSRSL CGLIPALSSF LLPRMNPFVL INLAGAFALG 240
  241 ITYMLIEINN YNAMDTASAV AIALMTFGTM YPMSVYSGKV LLQTTPSHVI GQLDKLLREV 300
  301 STLDGVLEVR NEHFWTIGFG SLAGSVHVRI RRDADEQMVL AHVWNRLSAL VSALTVHVFK 360
  361 DEWSRASLSS GVLPSAPLSL SEYVTAAAVF PAAPSRAQGS EPTPATSTPA KPSSPPPEFS 420
  421 FHTPGRHVQP VVFQTAHPHR PLYGGLQGPG VRLGLGPRGP TLQAYRTLSA APHTYTSGTY 480
  481 TGPPRP

Type	Start	End	Confidence
Cytoplasmic	1	58	0.98
Transmembrane Helix	59	80	0.93
Non-Cytoplasmic	81	88	0.79
Transmembrane Helix	89	111	0.91
Cytoplasmic	112	125	0.83
Transmembrane Helix	126	146	0.86
Non-Cytoplasmic	147	159	0.87
Transmembrane Helix	160	182	0.85
Cytoplasmic	183	227	0.77
Transmembrane Helix	228	246	0.95
Non-Cytoplasmic	247	255	0.57
Transmembrane Helix	256	275	0.88
Cytoplasmic	276	486	0.64