YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HRG1A_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNKTYIRV GYSCMGMLVG FSAFLVWNIA YKQPWTAAMG GLSGVLALWA LVTHIMYIQD  60
   61 YWRTWLKGLK FFMAMGVIFS VLSIVAFISF LCVAISRQQS LTDPTSLYLS CVWSFMSLKW 120
  121 SFLLTLYSHR YRKEFADISI LNDF

Type	Start	End	Confidence
Cytoplasmic	1	7	0.94
Transmembrane Helix	8	30	0.90
Non-Cytoplasmic	31	36	0.78
Transmembrane Helix	37	58	0.93
Cytoplasmic	59	70	0.89
Transmembrane Helix	71	95	0.88
Non-Cytoplasmic	96	104	0.86
Transmembrane Helix	105	123	0.87
Cytoplasmic	124	144	0.81