YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGB_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.92
Transmembrane Helix	40	62	0.70
Non-Cytoplasmic	63	111	0.71
Transmembrane Helix	112	135	0.50
Cytoplasmic	136	155	0.55
Transmembrane Helix	156	175	0.39
Non-Cytoplasmic	176	205	0.67
Transmembrane Helix	206	230	0.82
Cytoplasmic	231	242	0.84
Transmembrane Helix	243	262	0.94
Non-Cytoplasmic	263	291	0.91
Transmembrane Helix	292	314	0.87
Cytoplasmic	315	320	0.82
Transmembrane Helix	321	338	0.93
Non-Cytoplasmic	339	343	0.81
Transmembrane Helix	344	363	0.90
Cytoplasmic	364	373	0.66
Transmembrane Helix	374	389	0.61
Non-Cytoplasmic	390	536	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKIRERFKQ SKSSNESVRL RKRSSILYST DDRKLQTLKI FGINITVFIV LVRLLNCVLV  60
   61 QTSFVPDEFW QSLEISHRMV FGYGYETWEW KEGIRGYSYP LLFALMYKLL QLISYDTVYL 120
  121 LVFVPRVFQA LLAAYADVKL YKLILQWETP DVAKWTCFCQ LCSWFAWFCC SRTLTNTTET 180
  181 ALTTLALCFY PLPGSKTHSS WKYLTLVSLA VVIRPTALIV WFPLIFYHFC TDQDKLKLIT 240
  241 HRYFPIGVLA LGVSTLIDSF FYGKWIFVQW NFLKFNVLHN VGEFYGSHPW HWYWTQGLPV 300
  301 VIGPHLPLVL HGCLLSTRKH TILLLTIIWT TAVYSLLAHK EFRFIYPVLP FCMIFCGLSL 360
  361 AKLQAWRKAA AGALLLFNLC PALYTGLVHQ RGALDVMHVL QPLCVSSQSP NPPELLFLMP 420
  421 CHSTPLYSHL HCPLKLRFLE CPPDLTGRQD YMDEADVFFS DPLHWLNTSF PLRSTLPSHL 480
  481 VLFDSLQKEI SSFLEENSFA KQAEIFHTHF PEGRVGKNIL IYSRRSEMKI NEGFIL